Model info
| Transcription factor | GATA6 | ||||||||
| Model | GATA6_HUMAN.H10DI.B | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | B | ||||||||
| Consensus | nhnnnnndvAGATAASRdddnnn | ||||||||
| wAUC | 0.8651916892793304 | ||||||||
| Best AUC | 0.9256764943692258 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| HGNC | 4174 | ||||||||
| EntrezGene | 2627 | ||||||||
| UniProt ID | GATA6_HUMAN | ||||||||
| UniProt AC | Q92908 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 51.688 | 9.893 | 40.104 | 35.299 | 52.646 | 28.179 | 0.0 | 33.49 | 30.213 | 26.289 | 9.669 | 15.581 | 52.036 | 27.7 | 24.539 | 62.673 |
| 02 | 61.841 | 25.309 | 54.132 | 45.302 | 44.837 | 13.098 | 0.97 | 33.155 | 27.303 | 15.293 | 20.737 | 10.979 | 35.271 | 26.66 | 25.992 | 59.119 |
| 03 | 62.425 | 26.476 | 38.771 | 41.581 | 38.809 | 19.213 | 0.885 | 21.453 | 29.389 | 29.052 | 23.045 | 20.345 | 41.768 | 23.597 | 29.717 | 53.475 |
| 04 | 56.167 | 15.043 | 60.99 | 40.191 | 46.652 | 11.391 | 3.336 | 36.96 | 29.224 | 15.77 | 24.932 | 22.491 | 48.689 | 29.714 | 20.7 | 37.751 |
| 05 | 46.463 | 21.984 | 82.427 | 29.857 | 27.915 | 9.752 | 4.037 | 30.214 | 38.34 | 29.523 | 33.175 | 8.919 | 30.741 | 18.712 | 43.101 | 44.839 |
| 06 | 33.974 | 12.876 | 50.733 | 45.876 | 38.161 | 11.547 | 1.862 | 28.401 | 64.59 | 28.535 | 45.645 | 23.97 | 24.618 | 11.728 | 24.952 | 52.531 |
| 07 | 43.699 | 7.898 | 45.219 | 64.528 | 30.959 | 9.878 | 2.924 | 20.925 | 47.675 | 9.686 | 38.006 | 27.824 | 31.663 | 17.683 | 57.477 | 43.955 |
| 08 | 49.366 | 59.667 | 36.927 | 8.035 | 17.404 | 15.041 | 1.968 | 10.732 | 33.577 | 55.578 | 41.035 | 13.437 | 43.593 | 45.007 | 42.914 | 25.718 |
| 09 | 129.603 | 2.055 | 0.0 | 12.283 | 91.846 | 0.0 | 0.0 | 83.447 | 99.159 | 0.87 | 0.0 | 22.815 | 44.504 | 0.0 | 1.13 | 12.29 |
| 10 | 0.0 | 0.935 | 364.175 | 0.0 | 0.0 | 0.0 | 2.925 | 0.0 | 0.0 | 0.0 | 1.13 | 0.0 | 0.0 | 0.0 | 130.835 | 0.0 |
| 11 | 0.0 | 0.0 | 0.0 | 0.0 | 0.935 | 0.0 | 0.0 | 0.0 | 499.065 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 12 | 0.0 | 0.988 | 1.837 | 497.175 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 13 | 0.0 | 0.0 | 0.0 | 0.0 | 0.988 | 0.0 | 0.0 | 0.0 | 1.837 | 0.0 | 0.0 | 0.0 | 491.913 | 0.0 | 0.0 | 5.262 |
| 14 | 488.596 | 1.905 | 2.373 | 1.864 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 5.262 | 0.0 | 0.0 | 0.0 |
| 15 | 60.609 | 72.642 | 354.87 | 5.736 | 0.0 | 1.041 | 0.864 | 0.0 | 1.172 | 0.0 | 1.201 | 0.0 | 0.0 | 0.0 | 1.864 | 0.0 |
| 16 | 23.226 | 6.627 | 31.928 | 0.0 | 53.543 | 13.832 | 1.913 | 4.395 | 214.631 | 33.467 | 99.972 | 10.73 | 3.775 | 1.015 | 0.947 | 0.0 |
| 17 | 77.328 | 22.531 | 47.752 | 147.564 | 27.511 | 5.054 | 0.0 | 22.375 | 62.958 | 17.75 | 32.58 | 21.471 | 5.963 | 0.896 | 2.853 | 5.413 |
| 18 | 89.186 | 8.704 | 49.888 | 25.981 | 25.531 | 3.584 | 1.86 | 15.257 | 34.48 | 16.269 | 15.358 | 17.079 | 108.61 | 12.007 | 35.307 | 40.899 |
| 19 | 105.6 | 41.619 | 61.807 | 48.782 | 16.451 | 8.589 | 2.911 | 12.612 | 45.35 | 15.321 | 30.737 | 11.005 | 38.162 | 16.497 | 25.49 | 19.066 |
| 20 | 61.742 | 39.608 | 70.844 | 33.369 | 44.307 | 12.71 | 0.0 | 25.01 | 35.985 | 24.098 | 38.953 | 21.91 | 22.786 | 22.88 | 24.867 | 20.933 |
| 21 | 38.193 | 16.192 | 57.167 | 53.267 | 52.595 | 9.143 | 3.008 | 34.549 | 61.137 | 21.846 | 29.019 | 22.661 | 20.474 | 17.159 | 35.15 | 28.438 |
| 22 | 64.608 | 16.854 | 50.382 | 40.557 | 22.872 | 19.434 | 0.0 | 22.034 | 43.007 | 17.033 | 25.549 | 38.755 | 34.726 | 25.436 | 29.796 | 48.956 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 0.498 | -1.124 | 0.247 | 0.12 | 0.517 | -0.102 | -4.4 | 0.068 | -0.033 | -0.171 | -1.146 | -0.684 | 0.505 | -0.119 | -0.238 | 0.69 |
| 02 | 0.676 | -0.208 | 0.544 | 0.368 | 0.357 | -0.853 | -3.148 | 0.058 | -0.133 | -0.702 | -0.404 | -1.024 | 0.12 | -0.157 | -0.182 | 0.632 |
| 03 | 0.686 | -0.164 | 0.213 | 0.283 | 0.214 | -0.479 | -3.213 | -0.371 | -0.061 | -0.072 | -0.3 | -0.423 | 0.287 | -0.277 | -0.05 | 0.532 |
| 04 | 0.581 | -0.718 | 0.663 | 0.249 | 0.397 | -0.988 | -2.14 | 0.166 | -0.066 | -0.672 | -0.223 | -0.324 | 0.439 | -0.05 | -0.406 | 0.187 |
| 05 | 0.393 | -0.347 | 0.962 | -0.045 | -0.111 | -1.138 | -1.967 | -0.033 | 0.202 | -0.056 | 0.059 | -1.224 | -0.016 | -0.505 | 0.318 | 0.357 |
| 06 | 0.083 | -0.869 | 0.48 | 0.38 | 0.198 | -0.975 | -2.643 | -0.094 | 0.72 | -0.09 | 0.375 | -0.261 | -0.235 | -0.96 | -0.222 | 0.514 |
| 07 | 0.332 | -1.34 | 0.366 | 0.719 | -0.009 | -1.126 | -2.257 | -0.395 | 0.418 | -1.144 | 0.194 | -0.115 | 0.013 | -0.56 | 0.604 | 0.338 |
| 08 | 0.453 | 0.641 | 0.165 | -1.323 | -0.576 | -0.718 | -2.597 | -1.046 | 0.071 | 0.57 | 0.269 | -0.828 | 0.329 | 0.361 | 0.314 | -0.192 |
| 09 | 1.413 | -2.561 | -4.4 | -0.915 | 1.07 | -4.4 | -4.4 | 0.974 | 1.146 | -3.224 | -4.4 | -0.31 | 0.35 | -4.4 | -3.037 | -0.914 |
| 10 | -4.4 | -3.174 | 2.444 | -4.4 | -4.4 | -4.4 | -2.256 | -4.4 | -4.4 | -4.4 | -3.037 | -4.4 | -4.4 | -4.4 | 1.423 | -4.4 |
| 11 | -4.4 | -4.4 | -4.4 | -4.4 | -3.174 | -4.4 | -4.4 | -4.4 | 2.759 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
| 12 | -4.4 | -3.135 | -2.654 | 2.755 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
| 13 | -4.4 | -4.4 | -4.4 | -4.4 | -3.135 | -4.4 | -4.4 | -4.4 | -2.654 | -4.4 | -4.4 | -4.4 | 2.745 | -4.4 | -4.4 | -1.723 |
| 14 | 2.738 | -2.624 | -2.439 | -2.642 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -1.723 | -4.4 | -4.4 | -4.4 |
| 15 | 0.656 | 0.837 | 2.418 | -1.642 | -4.4 | -3.097 | -3.229 | -4.4 | -3.009 | -4.4 | -2.991 | -4.4 | -4.4 | -4.4 | -2.642 | -4.4 |
| 16 | -0.293 | -1.506 | 0.021 | -4.4 | 0.533 | -0.8 | -2.621 | -1.889 | 1.916 | 0.068 | 1.154 | -1.046 | -2.028 | -3.116 | -3.165 | -4.4 |
| 17 | 0.899 | -0.322 | 0.42 | 1.543 | -0.126 | -1.76 | -4.4 | -0.329 | 0.694 | -0.556 | 0.041 | -0.37 | -1.606 | -3.204 | -2.278 | -1.696 |
| 18 | 1.041 | -1.247 | 0.463 | -0.182 | -0.199 | -2.075 | -2.644 | -0.704 | 0.097 | -0.642 | -0.698 | -0.594 | 1.237 | -0.937 | 0.121 | 0.266 |
| 19 | 1.209 | 0.283 | 0.676 | 0.441 | -0.631 | -1.26 | -2.26 | -0.889 | 0.369 | -0.7 | -0.016 | -1.021 | 0.198 | -0.628 | -0.201 | -0.486 |
| 20 | 0.675 | 0.234 | 0.812 | 0.065 | 0.345 | -0.882 | -4.4 | -0.22 | 0.139 | -0.256 | 0.218 | -0.35 | -0.311 | -0.307 | -0.225 | -0.395 |
| 21 | 0.198 | -0.646 | 0.598 | 0.528 | 0.516 | -1.2 | -2.232 | 0.099 | 0.665 | -0.353 | -0.073 | -0.317 | -0.416 | -0.589 | 0.116 | -0.093 |
| 22 | 0.72 | -0.607 | 0.473 | 0.258 | -0.308 | -0.468 | -4.4 | -0.344 | 0.316 | -0.597 | -0.199 | 0.213 | 0.104 | -0.203 | -0.047 | 0.444 |