Model info
| Transcription factor | EVX1 | ||||||||
| Model | EVX1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 20 | ||||||||
| Quality | D | ||||||||
| Consensus | KnnnnnnATGTTTACTTAAM | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 6 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | EVX (Even-skipped homolog){3.1.1.10} | ||||||||
| HGNC | 3506 | ||||||||
| EntrezGene | 2128 | ||||||||
| UniProt ID | EVX1_HUMAN | ||||||||
| UniProt AC | P49640 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.5 | 0.5 | 1.5 | 3.5 |
| 02 | 1.5 | 0.5 | 2.5 | 1.5 |
| 03 | 2.5 | 1.5 | 0.5 | 1.5 |
| 04 | 1.0 | 1.0 | 1.0 | 3.0 |
| 05 | 3.0 | 0.0 | 0.0 | 3.0 |
| 06 | 2.0 | 0.0 | 2.0 | 2.0 |
| 07 | 1.0 | 1.0 | 1.0 | 3.0 |
| 08 | 4.0 | 0.0 | 0.0 | 2.0 |
| 09 | 0.0 | 0.0 | 0.0 | 6.0 |
| 10 | 1.0 | 0.0 | 5.0 | 0.0 |
| 11 | 0.0 | 0.0 | 0.0 | 6.0 |
| 12 | 0.0 | 0.0 | 0.0 | 6.0 |
| 13 | 0.0 | 0.0 | 1.0 | 5.0 |
| 14 | 5.0 | 0.0 | 1.0 | 0.0 |
| 15 | 0.0 | 5.0 | 0.0 | 1.0 |
| 16 | 1.0 | 0.0 | 0.0 | 5.0 |
| 17 | 0.0 | 0.0 | 0.0 | 6.0 |
| 18 | 6.0 | 0.0 | 0.0 | 0.0 |
| 19 | 4.0 | 0.0 | 0.0 | 2.0 |
| 20 | 3.0 | 2.0 | 1.0 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.72 | -0.72 | 0.0 | 0.706 |
| 02 | 0.0 | -0.72 | 0.414 | 0.0 |
| 03 | 0.414 | 0.0 | -0.72 | 0.0 |
| 04 | -0.297 | -0.297 | -0.297 | 0.571 |
| 05 | 0.571 | -1.47 | -1.47 | 0.571 |
| 06 | 0.228 | -1.47 | 0.228 | 0.228 |
| 07 | -0.297 | -0.297 | -0.297 | 0.571 |
| 08 | 0.826 | -1.47 | -1.47 | 0.228 |
| 09 | -1.47 | -1.47 | -1.47 | 1.197 |
| 10 | -0.297 | -1.47 | 1.028 | -1.47 |
| 11 | -1.47 | -1.47 | -1.47 | 1.197 |
| 12 | -1.47 | -1.47 | -1.47 | 1.197 |
| 13 | -1.47 | -1.47 | -0.297 | 1.028 |
| 14 | 1.028 | -1.47 | -0.297 | -1.47 |
| 15 | -1.47 | 1.028 | -1.47 | -0.297 |
| 16 | -0.297 | -1.47 | -1.47 | 1.028 |
| 17 | -1.47 | -1.47 | -1.47 | 1.197 |
| 18 | 1.197 | -1.47 | -1.47 | -1.47 |
| 19 | 0.826 | -1.47 | -1.47 | 0.228 |
| 20 | 0.571 | 0.228 | -0.297 | -1.47 |