Model info
| Transcription factor | Egr2 | ||||||||
| Model | EGR2_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | dGvGKGGGCGK | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 23 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors{2.3.1} | ||||||||
| TF subfamily | EGR factors{2.3.1.3} | ||||||||
| MGI | 95296 | ||||||||
| EntrezGene | 13654 | ||||||||
| UniProt ID | EGR2_MOUSE | ||||||||
| UniProt AC | P08152 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5.172 | 2.644 | 7.816 | 5.057 |
| 02 | 1.034 | 0.0 | 19.655 | 0.0 |
| 03 | 4.943 | 8.621 | 4.253 | 2.874 |
| 04 | 0.0 | 0.0 | 20.69 | 0.0 |
| 05 | 1.034 | 0.575 | 5.977 | 13.103 |
| 06 | 0.0 | 0.0 | 20.69 | 0.0 |
| 07 | 0.0 | 0.0 | 20.69 | 0.0 |
| 08 | 0.0 | 0.0 | 20.69 | 0.0 |
| 09 | 1.034 | 14.828 | 0.0 | 4.828 |
| 10 | 0.0 | 0.0 | 17.701 | 2.989 |
| 11 | 2.816 | 0.747 | 13.506 | 3.621 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | -0.556 | 0.369 | -0.02 |
| 02 | -1.197 | -2.058 | 1.236 | -2.058 |
| 03 | -0.04 | 0.458 | -0.169 | -0.49 |
| 04 | -2.058 | -2.058 | 1.286 | -2.058 |
| 05 | -1.197 | -1.493 | 0.127 | 0.849 |
| 06 | -2.058 | -2.058 | 1.286 | -2.058 |
| 07 | -2.058 | -2.058 | 1.286 | -2.058 |
| 08 | -2.058 | -2.058 | 1.286 | -2.058 |
| 09 | -1.197 | 0.966 | -2.058 | -0.06 |
| 10 | -2.058 | -2.058 | 1.136 | -0.459 |
| 11 | -0.506 | -1.372 | 0.878 | -0.303 |