Model info
| Transcription factor | EGR1 | ||||||||
| Model | EGR1_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Consensus | vvdvdRhGKGGGYRKddv | ||||||||
| wAUC | 0.8767817638972311 | ||||||||
| Best AUC | 0.9327577341456722 | ||||||||
| Benchmark datasets | 9 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors{2.3.1} | ||||||||
| TF subfamily | EGR factors{2.3.1.3} | ||||||||
| HGNC | 3238 | ||||||||
| EntrezGene | 1958 | ||||||||
| UniProt ID | EGR1_HUMAN | ||||||||
| UniProt AC | P18146 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 94.815 | 95.781 | 219.604 | 89.801 |
| 02 | 104.434 | 103.291 | 223.105 | 69.17 |
| 03 | 106.145 | 72.365 | 225.838 | 95.652 |
| 04 | 135.002 | 70.489 | 234.026 | 60.483 |
| 05 | 111.102 | 37.004 | 190.086 | 161.808 |
| 06 | 57.9 | 40.948 | 378.408 | 22.744 |
| 07 | 84.07 | 242.288 | 24.622 | 149.02 |
| 08 | 20.335 | 20.953 | 404.316 | 54.396 |
| 09 | 17.434 | 3.597 | 225.574 | 253.394 |
| 10 | 80.434 | 1.828 | 402.309 | 15.43 |
| 11 | 3.682 | 0.0 | 487.899 | 8.419 |
| 12 | 15.558 | 19.276 | 457.286 | 7.88 |
| 13 | 131.147 | 225.974 | 2.997 | 139.882 |
| 14 | 90.181 | 5.625 | 374.81 | 29.383 |
| 15 | 36.321 | 5.638 | 387.499 | 70.543 |
| 16 | 117.952 | 45.812 | 266.926 | 69.309 |
| 17 | 138.968 | 48.789 | 229.182 | 83.061 |
| 18 | 109.253 | 91.741 | 244.618 | 54.387 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.272 | -0.263 | 0.558 | -0.326 |
| 02 | -0.177 | -0.188 | 0.574 | -0.582 |
| 03 | -0.161 | -0.538 | 0.586 | -0.264 |
| 04 | 0.076 | -0.563 | 0.621 | -0.713 |
| 05 | -0.116 | -1.189 | 0.415 | 0.255 |
| 06 | -0.755 | -1.091 | 1.099 | -1.65 |
| 07 | -0.391 | 0.656 | -1.576 | 0.174 |
| 08 | -1.755 | -1.727 | 1.165 | -0.816 |
| 09 | -1.897 | -3.201 | 0.585 | 0.7 |
| 10 | -0.434 | -3.622 | 1.16 | -2.008 |
| 11 | -3.185 | -4.4 | 1.353 | -2.541 |
| 12 | -2.001 | -1.804 | 1.288 | -2.596 |
| 13 | 0.047 | 0.587 | -3.325 | 0.111 |
| 14 | -0.322 | -2.87 | 1.09 | -1.409 |
| 15 | -1.206 | -2.868 | 1.123 | -0.563 |
| 16 | -0.057 | -0.983 | 0.752 | -0.58 |
| 17 | 0.105 | -0.922 | 0.601 | -0.403 |
| 18 | -0.133 | -0.305 | 0.665 | -0.816 |