Model info
| Transcription factor | CTCF | ||||||||
| Model | CTCF_HUMAN.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | A | ||||||||
| Consensus | bbdCCRShAGGKGGCRSbvbndn | ||||||||
| wAUC | 0.9789797047341303 | ||||||||
| Best AUC | 0.9965780557602157 | ||||||||
| Benchmark datasets | 151 | ||||||||
| Aligned words | 488 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | CTCF-like factors{2.3.3.50} | ||||||||
| HGNC | 13723 | ||||||||
| EntrezGene | 10664 | ||||||||
| UniProt ID | CTCF_HUMAN | ||||||||
| UniProt AC | P49711 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 15.375 | 13.224 | 16.255 | 9.73 | 25.72 | 38.046 | 61.99 | 40.587 | 17.842 | 14.825 | 25.941 | 16.941 | 29.457 | 30.49 | 97.835 | 31.737 |
| 02 | 23.889 | 4.971 | 42.683 | 16.85 | 45.127 | 9.898 | 31.84 | 9.72 | 40.629 | 20.133 | 111.661 | 29.599 | 16.566 | 9.828 | 51.797 | 20.804 |
| 03 | 18.368 | 98.926 | 4.937 | 3.981 | 4.025 | 37.876 | 1.986 | 0.944 | 18.67 | 193.524 | 10.8 | 14.986 | 0.978 | 70.129 | 0.926 | 4.94 |
| 04 | 0.0 | 40.095 | 0.944 | 1.0 | 3.094 | 393.41 | 2.003 | 1.947 | 0.0 | 17.687 | 0.962 | 0.0 | 0.0 | 24.851 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 1.888 | 1.205 | 335.833 | 11.711 | 90.945 | 37.555 | 0.0 | 2.003 | 0.944 | 0.962 | 0.0 | 1.947 | 1.0 | 0.0 |
| 06 | 5.897 | 219.733 | 104.129 | 6.074 | 0.953 | 10.801 | 3.908 | 0.0 | 1.028 | 61.126 | 28.596 | 4.028 | 1.939 | 17.807 | 19.976 | 0.0 |
| 07 | 0.953 | 2.013 | 0.0 | 6.85 | 47.432 | 115.904 | 19.075 | 127.057 | 10.789 | 91.769 | 9.981 | 44.069 | 2.165 | 1.946 | 1.112 | 4.878 |
| 08 | 42.61 | 7.763 | 8.032 | 2.933 | 200.55 | 1.993 | 1.919 | 7.17 | 27.163 | 0.985 | 1.034 | 0.985 | 159.963 | 0.0 | 13.825 | 9.067 |
| 09 | 0.0 | 0.0 | 430.287 | 0.0 | 0.0 | 0.0 | 10.742 | 0.0 | 1.0 | 1.034 | 22.776 | 0.0 | 0.0 | 0.0 | 20.155 | 0.0 |
| 10 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 1.034 | 0.0 | 179.076 | 1.059 | 302.685 | 1.139 | 0.0 | 0.0 | 0.0 | 0.0 |
| 11 | 0.0 | 2.948 | 108.946 | 67.182 | 0.0 | 0.0 | 1.059 | 0.0 | 19.445 | 10.712 | 157.915 | 116.648 | 0.0 | 0.0 | 0.0 | 1.139 |
| 12 | 0.0 | 0.0 | 19.445 | 0.0 | 0.0 | 0.0 | 13.66 | 0.0 | 2.851 | 4.288 | 259.811 | 0.97 | 0.0 | 0.0 | 184.969 | 0.0 |
| 13 | 0.953 | 0.0 | 1.897 | 0.0 | 0.0 | 0.0 | 2.09 | 2.198 | 22.801 | 10.824 | 405.069 | 39.19 | 0.0 | 0.0 | 0.97 | 0.0 |
| 14 | 0.935 | 20.783 | 0.0 | 2.037 | 0.0 | 5.912 | 0.0 | 4.913 | 44.855 | 326.416 | 3.82 | 34.936 | 0.0 | 41.388 | 0.0 | 0.0 |
| 15 | 5.798 | 0.953 | 37.177 | 1.861 | 172.642 | 7.501 | 210.387 | 3.969 | 1.897 | 0.0 | 1.923 | 0.0 | 4.1 | 0.0 | 37.785 | 0.0 |
| 16 | 10.874 | 54.132 | 111.68 | 7.752 | 1.087 | 5.461 | 0.953 | 0.953 | 26.586 | 218.319 | 31.435 | 10.932 | 0.0 | 4.83 | 0.0 | 1.0 |
| 17 | 5.985 | 10.81 | 4.991 | 16.76 | 13.227 | 101.22 | 16.071 | 152.224 | 11.615 | 70.624 | 14.6 | 47.228 | 2.941 | 7.83 | 5.08 | 4.787 |
| 18 | 9.874 | 6.916 | 11.951 | 5.028 | 115.712 | 45.436 | 22.082 | 7.255 | 11.861 | 21.984 | 4.974 | 1.923 | 63.796 | 43.679 | 108.755 | 4.768 |
| 19 | 34.258 | 30.849 | 88.245 | 47.891 | 15.72 | 19.239 | 32.901 | 50.157 | 7.83 | 54.1 | 18.817 | 67.014 | 1.0 | 3.959 | 9.133 | 4.882 |
| 20 | 26.129 | 8.983 | 10.085 | 13.612 | 37.993 | 18.881 | 18.962 | 32.31 | 72.569 | 25.838 | 24.064 | 26.625 | 27.557 | 32.749 | 51.201 | 58.438 |
| 21 | 28.622 | 9.765 | 112.266 | 13.594 | 28.467 | 12.901 | 28.239 | 16.843 | 21.912 | 24.057 | 50.419 | 7.924 | 13.613 | 20.728 | 66.22 | 30.425 |
| 22 | 23.707 | 33.037 | 24.747 | 11.125 | 24.214 | 13.728 | 18.691 | 10.818 | 47.416 | 104.644 | 62.327 | 42.755 | 7.753 | 34.356 | 17.823 | 8.853 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -0.669 | -0.815 | -0.614 | -1.112 | -0.164 | 0.223 | 0.707 | 0.287 | -0.523 | -0.704 | -0.156 | -0.574 | -0.03 | 0.004 | 1.161 | 0.043 |
| 02 | -0.237 | -1.748 | 0.337 | -0.579 | 0.392 | -1.096 | 0.047 | -1.113 | 0.288 | -0.405 | 1.293 | -0.026 | -0.596 | -1.102 | 0.529 | -0.373 |
| 03 | -0.495 | 1.172 | -1.754 | -1.952 | -1.942 | 0.218 | -2.562 | -3.14 | -0.479 | 1.841 | -1.011 | -0.694 | -3.116 | 0.83 | -3.154 | -1.754 |
| 04 | -4.377 | 0.275 | -3.14 | -3.099 | -2.179 | 2.55 | -2.555 | -2.579 | -4.377 | -0.532 | -3.127 | -4.377 | -4.377 | -0.198 | -4.377 | -4.377 |
| 05 | -4.377 | -4.377 | -2.604 | -2.961 | 2.392 | -0.933 | 1.088 | 0.21 | -4.377 | -2.555 | -3.14 | -3.127 | -4.377 | -2.579 | -3.099 | -4.377 |
| 06 | -1.588 | 1.968 | 1.223 | -1.561 | -3.134 | -1.011 | -1.969 | -4.377 | -3.079 | 0.693 | -0.06 | -1.941 | -2.582 | -0.525 | -0.413 | -4.377 |
| 07 | -3.134 | -2.551 | -4.377 | -1.447 | 0.441 | 1.33 | -0.458 | 1.421 | -1.013 | 1.097 | -1.088 | 0.368 | -2.49 | -2.579 | -3.022 | -1.765 |
| 08 | 0.335 | -1.328 | -1.296 | -2.227 | 1.877 | -2.559 | -2.591 | -1.404 | -0.11 | -3.11 | -3.075 | -3.11 | 1.651 | -4.377 | -0.772 | -1.18 |
| 09 | -4.377 | -4.377 | 2.639 | -4.377 | -4.377 | -4.377 | -1.017 | -4.377 | -3.099 | -3.075 | -0.284 | -4.377 | -4.377 | -4.377 | -0.404 | -4.377 |
| 10 | -4.377 | -4.377 | -3.099 | -4.377 | -4.377 | -4.377 | -3.075 | -4.377 | 1.764 | -3.058 | 2.288 | -3.004 | -4.377 | -4.377 | -4.377 | -4.377 |
| 11 | -4.377 | -2.222 | 1.268 | 0.787 | -4.377 | -4.377 | -3.058 | -4.377 | -0.439 | -1.019 | 1.638 | 1.336 | -4.377 | -4.377 | -4.377 | -3.004 |
| 12 | -4.377 | -4.377 | -0.439 | -4.377 | -4.377 | -4.377 | -0.784 | -4.377 | -2.252 | -1.884 | 2.135 | -3.121 | -4.377 | -4.377 | 1.796 | -4.377 |
| 13 | -3.134 | -4.377 | -2.6 | -4.377 | -4.377 | -4.377 | -2.519 | -2.477 | -0.283 | -1.009 | 2.579 | 0.252 | -4.377 | -4.377 | -3.121 | -4.377 |
| 14 | -3.147 | -0.374 | -4.377 | -2.541 | -4.377 | -1.586 | -4.377 | -1.759 | 0.386 | 2.363 | -1.99 | 0.138 | -4.377 | 0.306 | -4.377 | -4.377 |
| 15 | -1.604 | -3.134 | 0.2 | -2.616 | 1.727 | -1.361 | 1.925 | -1.955 | -2.601 | -4.377 | -2.589 | -4.377 | -1.925 | -4.377 | 0.216 | -4.377 |
| 16 | -1.005 | 0.572 | 1.293 | -1.33 | -3.039 | -1.66 | -3.134 | -3.134 | -0.131 | 1.961 | 0.034 | -1.0 | -4.377 | -1.774 | -4.377 | -3.099 |
| 17 | -1.574 | -1.011 | -1.744 | -0.584 | -0.815 | 1.195 | -0.625 | 1.602 | -0.941 | 0.837 | -0.719 | 0.437 | -2.224 | -1.32 | -1.728 | -1.783 |
| 18 | -1.098 | -1.438 | -0.914 | -1.737 | 1.328 | 0.399 | -0.314 | -1.393 | -0.921 | -0.318 | -1.747 | -2.589 | 0.735 | 0.359 | 1.266 | -1.786 |
| 19 | 0.119 | 0.015 | 1.058 | 0.451 | -0.647 | -0.449 | 0.079 | 0.497 | -1.32 | 0.572 | -0.471 | 0.784 | -3.099 | -1.957 | -1.173 | -1.764 |
| 20 | -0.149 | -1.189 | -1.078 | -0.787 | 0.221 | -0.468 | -0.464 | 0.061 | 0.864 | -0.16 | -0.23 | -0.13 | -0.096 | 0.074 | 0.517 | 0.648 |
| 21 | -0.059 | -1.109 | 1.298 | -0.789 | -0.064 | -0.839 | -0.072 | -0.58 | -0.322 | -0.23 | 0.502 | -1.309 | -0.787 | -0.376 | 0.773 | 0.002 |
| 22 | -0.244 | 0.083 | -0.202 | -0.983 | -0.223 | -0.779 | -0.478 | -1.01 | 0.441 | 1.228 | 0.712 | 0.338 | -1.33 | 0.122 | -0.524 | -1.203 |