Model info
| Transcription factor | CDX2 | ||||||||
| Model | CDX2_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 8 | ||||||||
| Quality | C | ||||||||
| Consensus | WTTTAYdd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 36 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | CDX (Caudal type homeobox){3.1.1.9} | ||||||||
| HGNC | 1806 | ||||||||
| EntrezGene | 1045 | ||||||||
| UniProt ID | CDX2_HUMAN | ||||||||
| UniProt AC | Q99626 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 17.293 | 1.024 | 2.503 | 15.132 |
| 02 | 2.162 | 0.0 | 0.0 | 33.79 |
| 03 | 0.0 | 0.0 | 1.024 | 34.928 |
| 04 | 3.072 | 0.0 | 0.0 | 32.88 |
| 05 | 34.928 | 0.0 | 1.024 | 0.0 |
| 06 | 0.0 | 10.922 | 2.275 | 22.754 |
| 07 | 12.856 | 0.91 | 15.473 | 6.713 |
| 08 | 10.751 | 2.105 | 15.302 | 7.793 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.61 | -1.639 | -1.068 | 0.483 |
| 02 | -1.173 | -2.401 | -2.401 | 1.255 |
| 03 | -2.401 | -2.401 | -1.639 | 1.288 |
| 04 | -0.913 | -2.401 | -2.401 | 1.229 |
| 05 | 1.288 | -2.401 | -1.639 | -2.401 |
| 06 | -2.401 | 0.179 | -1.137 | 0.872 |
| 07 | 0.33 | -1.7 | 0.504 | -0.262 |
| 08 | 0.164 | -1.192 | 0.494 | -0.129 |